Hedgehog Signaling Pathway Database
 
Zebrafish Microarray Screen Data


"Hedgehog proteins play critical roles in organizing the embryonic development of animals, largely through modulation of target gene expression. Little is currently known, however, about the kinds and numbers of genes whose expression is controlled, directly or indirectly, by Hedgehog activity. Using techniques to globally repress or activate Hedgehog signaling in zebrafish embryos followed by microarray-based expression profiling, we have discovered a cohort of genes whose expression responds significantly to loss or gain of Hedgehog function. We have confirmed the Hedgehog responsiveness of a representative set of these genes with whole mount in situ hybridization as well as real time PCR."



Xu J, S.B., Tay SY, Mak A, Yu X, Lee SG, Yang H, Govindarajan KR, Leong B, Bourque G, Mathavan S, Roy S., Genetics, 2006.


Jump to: Up-regulated Genes Down-Regulated Genes

 

  • Up-regulated hedgehog Genes

GenInfo Identifier GenBank # Brief description of sequence Notes
7791135 AW777717.1 fk49f03.x1 Zebrafish 15-19hr embryonic cDNA Danio rerio cDNA 3' similar to SW:HNK2_XENLA P42587 HOMEOBOX PROTEIN XENK-2. ; increased expression by about 13 fold
4720105 AI641630.1 fc17g03.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3721684 3' increased expression by about 13 fold
1524009 X98883.1 DRPATCH D.rerio mRNA for patched protein  
6838990 AW342624.1 fi81b02.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:2644011 3'  
14389753 BG985673.1 2025 NICHD_Zebrafish_normalized_I Danio rerio cDNA clone 2025  
7790808 AW777561.1 fk47d11.x1 Zebrafish 15-19hr embryonic cDNA Danio rerio cDNA 3'  
5751166 AI958455.1 fc93a05.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3728912 5' similar to gb:Z20656_rna1 MYOSIN HEAVY CHAIN, CARDIAC MUSCLE ALPHA ISOFORM (HUMAN);  
2982344 AF052247.1 AF052247 Danio rerio fork head domain protein FKD4 (fkd4) mRNA, complete cds  
5041220 AI722891.1 fc27a06.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3722578 5' similar to SW:HK22_MOUSE P42586 HOMEOBOX PROTEIN NKX-2.2. ;  
4334885 AI477274.1 fb51d03.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3715397 3' similar to gb:J00068 ACTIN, ALPHA SKELETAL MUSCLE (HUMAN);  
16139369 BI896233.1 fb48g02.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3715154 3' similar to TR:Q14837 Q14837 MYOSIN HEAVY CHAIN ;  
16139369 BI896233.1 fb48g02.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3715154 3' similar to TR:Q14837 Q14837 MYOSIN HEAVY CHAIN ;  
2982352 AF052251.1 AF052251 Danio rerio fork head domain protein FKD8 (fkd8) mRNA, complete cds  
5341245 AI793607.1 fc49d09.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3724721 3' similar to contains Alu repetitive element;  
16089536 BI882265.1 fm91a04.x1 Zebrafish Research Genetics C32 fin Danio rerio cDNA clone IMAGE:4468110 3'  
17238704 BM155603.1 fw24e12.y1 Zebrafish C32 14 somite embryo Danio rerio cDNA clone IMAGE:5565790 5'  
5588004 AI882840.1 fd21h02.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:2352243 3'  
8712927 BE200753.1 fk90f06.x1 Zebrafish Research Genetics C32 fin Danio rerio cDNA 3'  
17515964 BM185006.1 fv16c09.x2 zebrafish adult brain Danio rerio cDNA clone IMAGE:5386745 3' similar to TR:Q9YI34 Q9YI34 CYTOCHROME P450. ;  
6501221 AW202594.1 fj19c12.y1 Zebrafish adult olfactory Danio rerio cDNA 5'  
2982354 AF052252.1 AF052252 Danio rerio fork head domain protein FKD9 (fkd9) mRNA, partial cds  
17517450 BM186492.1 fv80f02.x1 Zebrafish SJD day 8 fin regeneration Danio rerio cDNA clone IMAGE:5465595 3'  
4259538 AI416034.1 fb33b10.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3713659 5'  
15586430 BI671046.1 fp60a11.x1 Zebrafish adult retina cDNA Danio rerio cDNA clone IMAGE:4786101 3' similar to TR:O95475 O95475 SIX9 PROTEIN. ;  
4196947 AI384166.1 fb12g12.x1 zebrafish fin day0 regeneration Danio rerio cDNA 3'  
16139483 BI896347.1 fc48d07.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3724621 5'  
13101138 BG303611.1 fl58c10.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:3818106 3' similar to SW:CATB_BOVIN P07688 CATHEPSIN B PRECURSOR ;  
5707581 AI942925.1 fc79b06.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3727571 3'  
16371444 BI982141.1 fu60g05.x1 zebrafish adult brain Danio rerio cDNA clone IMAGE:5333960 3'  
5041302 AI722973.1 fc28a12.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3722686 5' similar to gb:M24122 MYOSIN LIGHT CHAIN 1, SLOW-TWITCH MUSCLE B/VENTRICULAR (HUMAN);  
10440774 BE693123.1 zeh0225r Zebrafish Embryonic Heart cDNA Library Danio rerio cDNA clone zeh0225 3'  
999448 X85977.1 DRNK22HP D.rerio nk2.2 gene mRNA for NK-2 homeobox protein  
311267 Z22762.1 BRAXIALA B.rerio mRNA for axial gene  
1279397 X97333.1 DRHER6BIN D.rerio mRNA for HER-6 DNA binding protein  
15685030 BI709335.1 fs63c07.y1 Zebrafish SJD day 8 fin regeneration Danio rerio cDNA clone IMAGE:5072269 5' similar to contains element CER repetitive element ;  
15959111 BI846588.1 fq80c11.x1 Zebrafish neuronal Danio rerio cDNA clone IMAGE:4886420 3'  
4436484 AI522349.1 fb18g01.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3712272 3'  
17033150 BM102082.1 fv12e04.x1 zebrafish adult brain Danio rerio cDNA clone IMAGE:5386447 3'  
2327064 AF002717.1 AF002717 Danio rerio netrin-1a mRNA, complete cds  
1143440 X87581.1 DRCYCD1GN D.reiro mRNA for cyclin D1  
16095615 BI888344.1 ZF637-2-000099 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGp637_18I10;MPMGp637I1018 5'  
4805903 AI667547.1 fc41f11.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3723981 3'  
6116170 AW128236.1 fe15g09.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3738976 3' similar to SW:ZG42_XENLA P18720 GASTRULA ZINC FINGER PROTEIN XLCGF42.1 ;  
10440829 BE693178.1 zeh1559r Zebrafish Embryonic Heart cDNA Library Danio rerio cDNA clone zeh1559 3'  
16087955 BI880684.1 fm78b12.x1 Zebrafish adult retina cDNA Danio rerio cDNA clone IMAGE:4201319 3'  
16058488 BI865355.1 fu01f07.y1 Zebrafish adult olfactory Danio rerio cDNA clone IMAGE:5283997 5'  
4226570 AI396677.1 fb08f11.x1 zebrafish fin day0 regeneration Danio rerio cDNA 3'  
6201681 AW153781.1 fi25f01.y1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:2602201 5' similar to TR:O94692 O94692 PUTATIVE TATA BINDING PROTEIN-INTERACTING PROTEIN. ;  
5934539 AW058900.1 fe50c06.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3742282 3' similar to contains element MER29 repetitive element ;  
4570432 AI584535.1 fb95c03.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3719620 3'  
4663148 AI626348.1 fc04e05.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3720416 3'  
12744733 AF318503.1 Danio rerio Myod (myod) gene, complete cds  
13101706 BG304179.1 fl31e01.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:3815497 3'  
5341534 AI793818.1 fc54e06.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3725218 3'  
4597658 AI588611.1 fb97c08.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3719822 5' similar to gb:M19713 TROPOMYOSIN ALPHA CHAIN, CARDIAC MUSCLE (HUMAN);  
4539023 AJ007742.1 DRE007742 Danio rerio mRNA for patched-2 protein  
6994959 AW454173.1 zehl1036 Zebrafish Embryonic Heart cDNA Library Danio rerio cDNA 5'  
16140555 BI897419.1 fl83b12.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:3820367 3'  
4508957 AI558719.1 fb79f07.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3718117 5'  
17516242 BM185284.1 fv45b12.x1 Sugano SJD adult male Danio rerio cDNA clone IMAGE:5411302 3'  
11053740 BF158536.1 fl33h05.y1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:3815673 5' similar to TR:O94776 O94776 MTA1-L1 PROTEIN. [1] ;  
4570441 AI584544.1 fb95d05.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3719625 3' similar to contains element LTR4 repetitive element ;  
5040753 AI722424.1 fc27b01.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3722569 3' similar to TR:O43496 O43496 DEAD-BOX PROTEIN ;  
15309161 BI476319.1 fq26e12.x3 zebrafish adult brain Danio rerio cDNA clone IMAGE:4832734 3'  
16912908 BM071178.1 fv03g10.x1 zebrafish adult brain Danio rerio cDNA clone IMAGE:5385786 3' similar to SW:GPV_HUMAN P40197 PLATELET GLYCOPROTEIN V PRECURSOR ;  
5752240 AI959527.1 fd10f03.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3730493 3'  
17024270 BM095304.1 fv32h07.x1 Sugano SJD adult male Danio rerio cDNA clone IMAGE:5410405 3' similar to TR:O95082 O95082 EH-BINDING PROTEIN ;  
4805510 AI667154.1 fc38c10.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3723666 3'  
7919502 AW826425.1 fk61c03.x1 Zebrafish adult retina cDNA Danio rerio cDNA 3'  
15952200 BI839677.1 fq41e05.y1 zebrafish adult brain Danio rerio cDNA clone IMAGE:4833897 5' similar to TR:Q9WV63 Q9WV63 KINESIN-LIKE PROTEIN KIF2 ;  
5341357 AI793554.1 fc51a11.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3724892 3'  
16097193 BI889922.1 ZF637-2-001677 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGP637_3A18;MPMGP637A183 5'  
482838 U08874.1 BRU08874 Brachydanio rerio major histocompatibility class II protein (MHC Brre-DEB) gene, complete cds  
5750154 AI957427.1 fc91a05.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3728720 3'  
8282090 BE017642.1 fk81f03.x1 Zebrafish Research Genetics C32 fin Danio rerio cDNA 3' similar to SW:DYHC_RAT P38650 DYNEIN HEAVY CHAIN, CYTOSOLIC ;  
16090034 BI882763.1 fm97d11.x1 Zebrafish Research Genetics C32 fin Danio rerio cDNA clone IMAGE:4468676 3' similar to contains element LTR5 repetitive element ;  
8281803 BE017355.1 fk75a01.x1 Zebrafish Research Genetics C32 fin Danio rerio cDNA 3'  
2982350 AF052250.1 AF052250 Danio rerio fork head domain protein FKD7 (fkd7) mRNA, complete cds  
5551802 AI877753.1 fc51c01.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3724896 5'  
4719934 AI641459.1 fc15d04.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3721447 3'  
6694222 AF184244.1 AF184244 Danio rerio ribonucleoprotein (hua) mRNA, complete cds  
6342244 AW165068.1 fe01a04.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3737550 3' similar to contains element MSR1 repetitive element ;  
5759888 AI965251.1 fc88e05.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3728480 3'  
15958366 BI845843.1 fs99f05.x1 Zebrafish neuronal Danio rerio cDNA clone IMAGE:5077785 3' similar to contains element LTR5 repetitive element ;  
15009256 BI325659.1 fr42a02.x1 zebrafish adult brain Danio rerio cDNA clone IMAGE:4955811 3'  
6031799 AW076647.1 fj68h01.x1 zebrafish gridded kidney Danio rerio cDNA 3'  
4398235 AI497232.1 fb63c08.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3716558 5' similar to SW:BHSM_HUMAN Q93088 BETAINE--HOMOCYSTEINE S-METHYLTRANSFERASE ;  
7919443 AW826366.1 fk59h11.x1 Zebrafish adult retina cDNA Danio rerio cDNA 3'  
5342015 AI794299.1 fc42h01.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3724081 5'  
16094889 BI887618.1 ZF637-1-001873 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGp637_9H8;MPMGp637H089 5'  
6951124 AW423192.1 fi69d09.y1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:2642897 5' similar to TR:O75268 O75268 F20887_1, PARTIAL CDS ;  
16094705 BI887434.1 ZF637-1-001689 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGP637_2N20;MPMGP637N202 5'  
4626242 AI617075.1 zehn1044.seq.F Zebrafish Embryonic Heart cDNA Library Danio rerio cDNA 5'  
15587549 BI672165.1 ft35e01.x1 Gong zebrafish testis Danio rerio cDNA clone IMAGE:5152608 3'  
5040048 AI721719.1 fc31e07.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3723012 3'  
15586531 BI671147.1 fp61f03.x1 Zebrafish adult retina cDNA Danio rerio cDNA clone IMAGE:4786684 3'  
14389578 BG985498.1 1202t3 NICHD_Zebrafish_normalized_I Danio rerio cDNA clone 1202  
13508431 AF234784.2 AF234784 Danio rerio cyclin A2 (CycA2) mRNA, complete cds  
8712855 BE200686.1 fk89d07.x1 Zebrafish Research Genetics C32 fin Danio rerio cDNA 3'  

GenInfo Identifier GenBank # Brief description of sequence Notes
14389602 BG985522.1 1340t3 NICHD_Zebrafish_normalized_I Danio rerio cDNA clone 1340  
16058164 BI865031.1 ft19a10.y1 Zebrafish neuronal Danio rerio cDNA clone IMAGE:5081778 5'  
14041783 AJ308516.1 DRE308516 Danio rerio mRNA for glycine receptor alphaZ3 subunit (glyRalpha3 gene)  
6342218 AW165042.1 fd99d03.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3737477 3'  
14163402 BG799070.1 fp17f09.y1 zebrafish gridded kidney Danio rerio cDNA clone IMAGE:4729888 5' similar to SW:MAL_HUMAN P21145 MYELIN AND LYMPHOCYTE PROTEIN ;  
6031840 AW076688.1 fj03d05.x1 Zebrafish adult olfactory Danio rerio cDNA 3' similar to contains Alu repetitive element;  
8713569 BE201395.1 fk89h11.y1 Zebrafish Research Genetics C32 fin Danio rerio cDNA 5' similar to gb:X54304 MYOSIN REGULATORY LIGHT CHAIN 2, NONSARCOMERIC (HUMAN);  
16089865 BI882594.1 fn03g07.x1 Zebrafish Research Genetics C32 fin Danio rerio cDNA clone IMAGE:4469197 3'  
6948671 AW420739.1 fj86a09.x1 zebrafish gridded kidney Danio rerio cDNA 3'  
16058140 BI865007.1 ft18e01.y1 Zebrafish neuronal Danio rerio cDNA clone IMAGE:5081929 5' similar to contains element MER33 MER33 repetitive element ;  
16929815 BM082885.1 fu29e04.x1 Campbell zebrafish ovary Danio rerio cDNA clone IMAGE:5306599 3' similar to TR:Q9WV38 Q9WV38 FRUCTOSE TRANSPORTER GLUT5. ;  
15954291 BI841768.1 ft02a10.y1 Zebrafish neuronal Danio rerio cDNA clone IMAGE:5080219 5'  
14012170 BG727084.1 fo78d02.x1 zebrafish gridded kidney Danio rerio cDNA clone IMAGE:4726298 3'  
5589216 AI884052.1 fc72g09.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3726976 3'  
15130642 dbj=AB055662.1 Danio rerio D3 mRNA, 3'UTR, partial sequence  
16374580 BI983756.1 fu06d06.x3 Campbell zebrafish ovary Danio rerio cDNA clone IMAGE:5304610 3'  
17516210 BM185252.1 fv44g11.x1 Sugano SJD adult male Danio rerio cDNA clone IMAGE:5411517 3'  
4094226 AI354073.1 zeh1369.seq.F Zebrafish Embryonic Heart cDNA Library Danio rerio cDNA 5'  
8896165 AF280090.1 Danio rerio dopachrome tautomerase (dct) mRNA, complete cds  
16087184 BI879913.1 fm67b09.x1 Zebrafish adult retina cDNA Danio rerio cDNA clone IMAGE:4200520 3'  
16058667 BI865534.1 ft24h12.x1 Zebrafish neuronal Danio rerio cDNA clone IMAGE:5082503 3'  
16058789 BI865656.1 ft23h08.y1 Zebrafish neuronal Danio rerio cDNA clone IMAGE:5082494 5'  
15586501 BI671117.1 fp61b08.x1 Zebrafish adult retina cDNA Danio rerio cDNA clone IMAGE:4786502 3'  
7790315 AW777351.1 fk42f11.x1 Zebrafish 15-19hr embryonic cDNA Danio rerio cDNA 3'  
5041539 AI723210.1 fc34a11.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3723260 3'  
17512684 BM181726.1 fv53c07.x1 Sugano SJD adult male Danio rerio cDNA clone IMAGE:5412108 3' similar to TR:Q14591 Q14591 ZINC FINGER PROTEIN ;contains element MER35 repetitive element ;  
14012674 BG727599.1 fo89b04.x1 zebrafish gridded kidney Danio rerio cDNA clone IMAGE:4726999 3'  
4663419 AI626619.1 fc05f01.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3720505 3'  
8698680 AF180891.1 AF180891 Danio rerio fast skeletal muscle myosin light polypeptide 3 (mylz3) mRNA, complete cds  
4663237 AI626437.1 fc06b08.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3720567 3'  
5435742 AI816663.1 A0273745 Zebrafish Kidney cDNA random primed, RZPD library no: 576 Danio rerio cDNA clone RZPD clone CHBOp576K042797Q3  
16095312 BI888041.1 ZF637-1-002296 Zebrafish shield stage whole embryo cDNA library MPMGp637 Danio rerio cDNA clone MPMGp637_10E13;MPMGp637E1310 5'  
4314253 AI461372.1 fb44c10.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3714738 3' similar to SW:ZO26_XENLA P18746 OOCYTE ZINC FINGER PROTEIN XLCOF26 ;contains element TAR1 repetitive element ;  
5872842 AW019312.1 fd51g07.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3733308 3'  
15955817 BI843294.1 ft59g01.x1 Gong zebrafish ovary Danio rerio cDNA clone IMAGE:5157696 3' similar to contains element MER1 repetitive element ;  
15799273 AF229448.1 Danio rerio jagged1 (jag1) mRNA, complete cds  
15958754 BI846231.1 fq79e12.y1 Zebrafish neuronal Danio rerio cDNA clone IMAGE:4886495 5'  
14389640 BG985575.1 5013t3 NICHD_Zebrafish_normalized_I Danio rerio cDNA clone 5013  
15010240 BI326643.1 fp50a09.y3 zebrafish gridded kidney Danio rerio cDNA clone IMAGE:4759961 5'  
17517871 BM186913.1 fv79e11.y1 Zebrafish SJD day 8 fin regeneration Danio rerio cDNA clone IMAGE:5465564 5'  
12013133 BF713861.1 EST36 zebrafish 6-9 hpf embryonic cDNA library Danio rerio cDNA  
15959007 BI846484.1 fq78a01.x1 Zebrafish neuronal Danio rerio cDNA clone IMAGE:4886280 3'  
2230632 AA497311.1 fa03g05.r1 Zebrafish ICRFzfls Danio rerio cDNA clone 3L5 5'  
15207349 BI430117.1 fr83d07.x1 zebrafish adult brain Danio rerio cDNA clone IMAGE:4967460 3'  
6082301 AW115963.1 fi05e09.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:2600296 3'  
15588000 BI672616.1 ft42d10.y1 Gong zebrafish ovary Danio rerio cDNA clone IMAGE:5153323 5'  
15045142 BI350696.1 fr36e01.y1 zebrafish adult brain Danio rerio cDNA clone IMAGE:4955593 5' similar to TR:Q90881 Q90881 HOMEOBOX PROTEIN. ;  
4719699 AI641224.1 fc21b03.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3721997 3'  
15587475 BI672091.1 ft34d03.x1 Gong zebrafish testis Danio rerio cDNA clone IMAGE:5152541 3'  
15588889 BI673514.1 ft43h02.x1 Gong zebrafish ovary Danio rerio cDNA clone IMAGE:5153522 3' similar to TR:Q9VAY3 Q9VAY3 CG4963 PROTEIN. ;  
16089963 BI882692.1 fm96e01.x1 Zebrafish Research Genetics C32 fin Danio rerio cDNA clone IMAGE:4468681 3'  
6950531 AW422599.1 fi44d06.y1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:2640491 5'  
13102560 BG305033.1 fl93h02.y1 Zebrafish adult retina cDNA Danio rerio cDNA clone IMAGE:4144371 5' similar to SW:P115_CHICK Q98917 MELANOSOMAL MATRIX PROTEIN 115 KD PROTEIN PRECURSOR. ;  
15959241 BI846718.1 fp87f10.y4 Zebrafish adult retina cDNA Danio rerio cDNA clone IMAGE:4789026 5'  
16089800 BI882529.1 fm94g07.x1 Zebrafish Research Genetics C32 fin Danio rerio cDNA clone IMAGE:4468429 3' similar to SW:ZN41_HUMAN P51814 ZINC FINGER PROTEIN 41 ;  
5751202 AI958489.1 fc93d04.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3728935 5'  
13102484 BG304957.1 fl93a01.y1 Zebrafish adult retina cDNA Danio rerio cDNA clone IMAGE:4144033 5' similar to TR:O57607 O57607 TYPE I KERATIN S5. ;  
1000101 U31825.1 DRU31825 Danio rerio clone Z2.3 melatonin receptor mRNA, partial cds  
6081986 AW115648.1 fj98e09.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:2599720 3'  
4570264 AI584367.1 fb92f11.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3719373 3' similar to contains element L1 repetitive element ;  
5552543 AI878494.1 fc59f08.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3725703 3'  
14012166 BG727080.1 fo78c07.x1 zebrafish gridded kidney Danio rerio cDNA clone IMAGE:4726260 3'  
8281872 BE017424.1 fk76c08.x1 Zebrafish Research Genetics C32 fin Danio rerio cDNA 3' similar to SW:CA28_MOUSE P25318 COLLAGEN ALPHA 2(VIII) CHAIN ;  
4720132 AI641657.1 fc22a10.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3722106 3'  
6949145 AW421213.1 fj94d01.x1 zebrafish gridded kidney Danio rerio cDNA 3'  
14012573 BG727498.1 fo76h02.x1 zebrafish gridded kidney Danio rerio cDNA clone IMAGE:4726130 3'  
15586298 BI670914.1 fp58a11.x1 Zebrafish adult retina cDNA Danio rerio cDNA clone IMAGE:4786077 3'  
6950210 AW422278.1 fi60d08.y1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:2642031 5' similar to TR:Q91423 Q91423 PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C ;  
2570791 AF024536.1 AF024536 Danio rerio atonal homologue-1 (zath-1) mRNA, complete cds  
608508 U16310.1 BRU16310 Brachydanio rerio homeodomain protein (msxA) mRNA, complete cds  
21166370 AF237712.2 Danio rerio brain-type fatty-acid binding protein mRNA, complete cds  
8698674 AF180888.1 AF180888 Danio rerio parvalbumin (pvalb) mRNA, complete cds  
32141419 AF207751.2 Danio rerio zinc finger protein Zic2 (zic2) mRNA, complete cds  
4285407 AI437376.1 fb30h02.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3713427 3'  
17517085 BM186127.1 fv98c07.y1 Zebrafish SJD adult male II Danio rerio cDNA clone IMAGE:5544973 5'  
6670159 AW281681.1 fj53a11.x1 zebrafish adult brain Danio rerio cDNA 3' similar to TR:Q90331 Q90331 FAST SKELETAL MYOSIN LIGHT CHAIN 1A. [1] ;  
5040791 AI722462.1 fc27f08.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3722631 3' zebrafish homologue of Scube2
4570227 AI584330.1 fb92b11.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3719325 3'  
15373720 BI533153.1 fq97c05.y3 zebrafish fin day3 regeneration Danio rerio cDNA clone 4926345 4926345 5'  
5041541 AI723212.1 fc34b01.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3723241 3'  
7231850 AW567292.1 fk24c03.x1 zebrafish fin day1 regeneration Danio rerio cDNA 3'  
16749895 BM036324.1 fu78g12.x1 Gong zebrafish testis Danio rerio cDNA clone IMAGE:5377342 3'  
4610458 AI601297.1 fc09c10.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3720882 3'  
29570807 AF165817.2 Danio rerio fast muscle-specific myosin heavy chain mRNA, partial cds  
8698684 AF180893.1 AF180893 Danio rerio fast skeletal muscle myosin heavy polypeptide 1 (myhz1) mRNA, partial cds  
17239170 BM155853.1 fw40f05.y1 Zebrafish SJD day 3 embryo Danio rerio cDNA clone IMAGE:5567360 5' similar to SW:CRG2_CYPCA P10044 GAMMA CRYSTALLIN M2 ;  
6202503 AW154601.1 fi30a08.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:2639126 3' similar to SW:YN61_YEAST P42839 HYPOTHETICAL 102.5 KD PROTEIN IN KRE1-HXT14 INTERGENIC REGION. ;  
7282414 AW595156.1 fk35g09.y1 zebrafish fin day1 regeneration Danio rerio cDNA 5'  
4512114 AF127981.1 AF127981 Danio rerio zinc finger protein zic1 mRNA, partial cds  
9822603 BE558113.1 fl19f09.y1 Zebrafish Research Genetics C32 fin Danio rerio cDNA 5'  
4226564 AI396671.1 fb08f05.x1 zebrafish fin day0 regeneration Danio rerio cDNA 3'  
16460523 BM004963.1 fu62c06.x1 zebrafish adult brain Danio rerio cDNA clone IMAGE:5334130 3'  
4719890 AI641415.1 fc14g04.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3721398 3'  
17516096 BM185138.1 fv43c07.x1 Sugano SJD adult male Danio rerio cDNA clone IMAGE:5411316 3' similar to TR:Q9PVU4 Q9PVU4 ALPHA-2-MACROGLOBULIN-2 ;  
4663261 AI626461.1 fc06e02.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3720602 3'  
4068165 AI331606.1 fa99d09.x1 zebrafish fin day3 regeneration Danio rerio cDNA 3'  
4286057 AI437466.1 fb34a07.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3713748 3'  
6948652 AW420720.1 fj85g01.x1 zebrafish gridded kidney Danio rerio cDNA 3'  
12330690 AF329830.1 Danio rerio T-box transcription factor eomesodermin mRNA, complete cds  
16085146 BI877875.1 fl67d09.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:3818921 3' similar to SW:Y196_HUMAN Q12768 HYPOTHETICAL PROTEIN KIAA0196. ;  
1008612 H56788.1 ZF-E10 zebrafish embryonic Danio rerio cDNA clone ZF-E10 5' end similar to crystallin beta-A4  
13103213 BG305686.1 fm08a07.x1 Zebrafish adult retina cDNA Danio rerio cDNA clone IMAGE:4145557 3'  
6116111 AW128279.1 fi11e03.x1 Sugano Kawakami zebrafish DRA Danio rerio cDNA clone IMAGE:2600860 3'  
17241062 BM156916.1 fv57g11.x1 Sugano SJD adult male Danio rerio cDNA clone IMAGE:5412692 3' similar to contains element MER8 repetitive element ;  
17236084 BM154199.1 fv85d09.x1 Zebrafish SJD adult male II Danio rerio cDNA clone IMAGE:5543872 3' similar to SW:CRG2_CYPCA P10044 GAMMA CRYSTALLIN M2 ;contains element MER30 repetitive element ;  
16540113 BM025757.1 fs82h05.y1 Zebrafish SJD day 8 fin regeneration Danio rerio cDNA clone IMAGE:5076344 5'  
16139396 BI896260.1 fb62b10.y1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3716443 5' similar to SW:T23O_HUMAN P48775 TRYPTOPHAN 2,3-DIOXYGENASE ;  
17034397 BM103327.1 fv20a03.x1 zebrafish adult brain Danio rerio cDNA clone IMAGE:5387021 3' similar to TR:O13120 O13120 HEAT SHOCK PROTEIN COGNATE 70. ;  
7919387 AW826310.1 fk59b05.x1 Zebrafish adult retina cDNA Danio rerio cDNA 3' similar to contains Alu repetitive element;  
15373728 BI533161.1 fq97d01.y3 zebrafish fin day3 regeneration Danio rerio cDNA clone 4926385 4926385 5'  
16059459 BI866326.1 fq43f10.x1 zebrafish adult brain Danio rerio cDNA clone IMAGE:4834315 3'  
16751456 AJ317957.1 DRE317957 Danio rerio mRNA for crystallin B1 protein  
16605515 AJ311846.1 DRE311846 Danio rerio mRNA for GTP cyclohydrolase I (gch gene), strain AB  

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Last updated 28-Aug-2006

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